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SELECT 
  SQL_CALC_FOUND_ROWS products.product_id, 
  descr1.product as product, 
  companies.company as company_name, 
  products.product_type, 
  products.parent_product_id, 
  descr1.full_description as full_description 
FROM 
  cscart_products as products 
  LEFT JOIN cscart_product_features_values as var_val_18 ON var_val_18.product_id = products.product_id 
  AND var_val_18.lang_code = 'en' 
  AND var_val_18.feature_id = 18 
  LEFT JOIN cscart_product_descriptions as descr1 ON descr1.product_id = products.product_id 
  AND descr1.lang_code = 'en' 
  LEFT JOIN cscart_product_prices as prices ON prices.product_id = products.product_id 
  AND prices.lower_limit = 1 
  LEFT JOIN cscart_companies AS companies ON companies.company_id = products.company_id 
  INNER JOIN cscart_products_categories as products_categories ON products_categories.product_id = products.product_id 
  INNER JOIN cscart_categories ON cscart_categories.category_id = products_categories.category_id 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  AND cscart_categories.storefront_id IN (0, 1) 
WHERE 
  1 
  AND (
    var_val_18.variant_id IN (123)
  ) 
  AND cscart_categories.category_id IN (249) 
  AND companies.status IN ('A') 
  AND (
    products.usergroup_ids = '' 
    OR FIND_IN_SET(0, products.usergroup_ids) 
    OR FIND_IN_SET(1, products.usergroup_ids)
  ) 
  AND products.status IN ('A') 
  AND prices.usergroup_id IN (0, 0, 1) 
  AND products.parent_product_id = 0 
  AND products.company_id IN('1', '2', '3', '4', '5', '6') 
  AND products.product_type != 'D' 
GROUP BY 
  products.product_id 
ORDER BY 
  product asc, 
  products.product_id ASC 
LIMIT 
  0, 12

Query time 0.00146

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "4.31"
    },
    "ordering_operation": {
      "using_filesort": true,
      "grouping_operation": {
        "using_temporary_table": true,
        "using_filesort": false,
        "nested_loop": [
          {
            "table": {
              "table_name": "cscart_categories",
              "access_type": "const",
              "possible_keys": [
                "PRIMARY",
                "c_status",
                "p_category_id"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "category_id"
              ],
              "key_length": "3",
              "ref": [
                "const"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 1,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "0.00",
                "eval_cost": "0.20",
                "prefix_cost": "0.00",
                "data_read_per_join": "2K"
              },
              "used_columns": [
                "category_id",
                "storefront_id",
                "usergroup_ids",
                "status"
              ]
            }
          },
          {
            "table": {
              "table_name": "var_val_18",
              "access_type": "ref",
              "possible_keys": [
                "PRIMARY",
                "fl",
                "variant_id",
                "lang_code",
                "product_id",
                "fpl",
                "idx_product_feature_variant_id"
              ],
              "key": "fl",
              "used_key_parts": [
                "feature_id",
                "lang_code",
                "variant_id"
              ],
              "key_length": "12",
              "ref": [
                "const",
                "const",
                "const"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 1,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "1.00",
                "eval_cost": "0.20",
                "prefix_cost": "1.20",
                "data_read_per_join": "792"
              },
              "used_columns": [
                "feature_id",
                "product_id",
                "variant_id",
                "lang_code"
              ],
              "attached_condition": "(`atulecarter_atul_demo1`.`var_val_18`.`product_id` is not null)"
            }
          },
          {
            "table": {
              "table_name": "products_categories",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "pt"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "category_id",
                "product_id"
              ],
              "key_length": "6",
              "ref": [
                "const",
                "atulecarter_atul_demo1.var_val_18.product_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 1,
              "filtered": "100.00",
              "using_index": true,
              "cost_info": {
                "read_cost": "1.00",
                "eval_cost": "0.20",
                "prefix_cost": "2.40",
                "data_read_per_join": "16"
              },
              "used_columns": [
                "product_id",
                "category_id"
              ]
            }
          },
          {
            "table": {
              "table_name": "products",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "status",
                "idx_parent_product_id"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "product_id"
              ],
              "key_length": "3",
              "ref": [
                "atulecarter_atul_demo1.var_val_18.product_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 0,
              "filtered": "42.58",
              "cost_info": {
                "read_cost": "1.00",
                "eval_cost": "0.09",
                "prefix_cost": "3.60",
                "data_read_per_join": "2K"
              },
              "used_columns": [
                "product_id",
                "product_type",
                "status",
                "company_id",
                "usergroup_ids",
                "parent_product_id"
              ],
              "attached_condition": "((`atulecarter_atul_demo1`.`products`.`parent_product_id` = 0) and ((`atulecarter_atul_demo1`.`products`.`usergroup_ids` = '') or find_in_set(0,`atulecarter_atul_demo1`.`products`.`usergroup_ids`) or find_in_set(1,`atulecarter_atul_demo1`.`products`.`usergroup_ids`)) and (`atulecarter_atul_demo1`.`products`.`status` = 'A') and (`atulecarter_atul_demo1`.`products`.`company_id` in ('1','2','3','4','5','6')) and (`atulecarter_atul_demo1`.`products`.`product_type` <> 'D'))"
            }
          },
          {
            "table": {
              "table_name": "companies",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "company_id"
              ],
              "key_length": "4",
              "ref": [
                "atulecarter_atul_demo1.products.company_id"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 0,
              "filtered": "16.67",
              "cost_info": {
                "read_cost": "0.43",
                "eval_cost": "0.01",
                "prefix_cost": "4.11",
                "data_read_per_join": "510"
              },
              "used_columns": [
                "company_id",
                "status",
                "company"
              ],
              "attached_condition": "(`atulecarter_atul_demo1`.`companies`.`status` = 'A')"
            }
          },
          {
            "table": {
              "table_name": "descr1",
              "access_type": "eq_ref",
              "possible_keys": [
                "PRIMARY",
                "product_id"
              ],
              "key": "PRIMARY",
              "used_key_parts": [
                "product_id",
                "lang_code"
              ],
              "key_length": "9",
              "ref": [
                "atulecarter_atul_demo1.var_val_18.product_id",
                "const"
              ],
              "rows_examined_per_scan": 1,
              "rows_produced_per_join": 0,
              "filtered": "100.00",
              "cost_info": {
                "read_cost": "0.07",
                "eval_cost": "0.01",
                "prefix_cost": "4.20",
                "data_read_per_join": "331"
              },
              "used_columns": [
                "product_id",
                "lang_code",
                "product",
                "full_description"
              ]
            }
          },
          {
            "table": {
              "table_name": "prices",
              "access_type": "ref",
              "possible_keys": [
                "usergroup",
                "product_id",
                "lower_limit",
                "usergroup_id"
              ],
              "key": "usergroup",
              "used_key_parts": [
                "product_id"
              ],
              "key_length": "3",
              "ref": [
                "atulecarter_atul_demo1.var_val_18.product_id"
              ],
              "rows_examined_per_scan": 3,
              "rows_produced_per_join": 0,
              "filtered": "97.36",
              "using_index": true,
              "cost_info": {
                "read_cost": "0.08",
                "eval_cost": "0.04",
                "prefix_cost": "4.31",
                "data_read_per_join": "4"
              },
              "used_columns": [
                "product_id",
                "lower_limit",
                "usergroup_id"
              ],
              "attached_condition": "((`atulecarter_atul_demo1`.`prices`.`lower_limit` = 1) and (`atulecarter_atul_demo1`.`prices`.`usergroup_id` in (0,0,1)))"
            }
          }
        ]
      }
    }
  }
}

Result

product_id	product	company_name	product_type	parent_product_id	full_description
139	Shinobido 2: Revenge of Zen	CS-Cart	P	0	<p> <p>Shinobido 2: Revenge of Zen is the sequel to Shinobido: Way of the Ninja, featuring the series’ trademark stealth action gameplay with the addition of new stylish assassin moves and a dynamic storyline. Developed by Acquire, the story is set six months after the events of the previous opus, with the Utakata region once again at the center of the storm and embroiled in a civil war involving the mysterious Magic Mirror. Players will take the role of Zen, a man who has suffered betrayal at the hands of his companions and the loss of his home. Saved by the Asuka clan of Utakata, Zen makes up his mind to live as an assassin and begins a perilous journey in search of revenge.</p> <p>Dynamic Storyline: Interact with three factions with different choices affecting the power balance between the factions and resulting in diverging storylines.</p> <p>Stealth action gameplay for a master assassin: Employ a variety of deadly finishing moves which vary according to the location. Activate the Zankoku for bullet-time action and use the Ninja Flying ability to freely explore environments.</p> <p>New ‘near’ network features: Boost your inventory by receiving gift items from other players using the PlayStation®Vita near feature.</p> <p>Original PS Vita rear touch panel gameplay features:  Use the rear touch panel to change to a first person view and launch long range weapons at enemies.</p> </p>